https://wiki.khatrilab.stanford.edu/ 2026-05-19T21:20:17+00:00 https://wiki.khatrilab.stanford.edu/ https://wiki.khatrilab.stanford.edu/lib/tpl/bootstrap3/images/favicon.ico text/html 2017-12-07T12:00:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/antigenid?rev=1512676854&do=diff Source code from our paper available [here]. text/html 2016-05-06T11:51:46+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/calendar?rev=1462560706&do=diff Unless otherwise specified, lab meetings are held in MSOB X-275, 2pm-3:30pm. text/html 2018-09-26T16:53:53+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/epitof?rev=1538006033&do=diff EpiTOF data files Normalized EpiTOF data from two cohorts of healthy unrelated individuals Biological Replicate 1 General Panel Biological Replicate 2 General Panel Biological Replicate 1 T cell Panel Biological Replicate 2 T cell Panel Normalized EpiTOF data from healthy twin cohorts Twin Cohort Set 1 General Panel Twin Cohort Set 2 General Panel Twin Cohort Set 1 T cell Panel Twin Cohort Set 2 T cell Panel text/html 2018-06-27T17:13:39+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/immunostates?rev=1530144819&do=diff ImmunoStates scripts are available [here]. text/html 2016-09-21T11:21:24+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/metacomparison?rev=1474482084&do=diff Methods to increase reproducibility in two-class comparisons via gene expression meta-analysis Timothy E. Sweeney, Winston A. Haynes, Francesco Vallania, John P. Ioannidis, Purvesh Khatri Nucleic Acids Research, 2016 Link to paper behind paywall The datasets used in the analysis are all available at their respective repositories; please see Tables S1-S3 for a list of accession numbers. text/html 2016-08-03T18:02:10+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/metacorrelator?rev=1470272530&do=diff Welcome to the MetaCorrelator webpage! To install MetaCorrelator please download code here: and install it in R using the following command: install.packages(“MetaCorrelator_1.0.0.tar.gz”, repos=NULL, type=“source”) MetaCorrelator can then be loaded in R using text/html 2017-11-01T22:57:20+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/metaintegrator?rev=1509602240&do=diff [Download the MetaIntegrator package. ] To install the package, download the above file and run the following command in R: install.packages(“MetaIntegrator_1.1.0.tar.gz”, repos=NULL, type=“source”) text/html 2018-06-12T16:36:35+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/metasignature?rev=1528846595&do=diff text/html 2016-04-25T17:18:27+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/mvs?rev=1461629907&do=diff Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses Andres-Terre M, McGuire H, Pouliot Y, Sweeney TE, Tato CM, Khatri P. Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses. Immunity, Dec 2015. doi: 10.1016/j.immuni.2015.11.003. PMID:26682989 Altmetric article info: Selected News Coverage text/html 2017-11-17T16:08:19+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/orientation?rev=1510963699&do=diff text/html 2015-05-02T11:41:17+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/publications?rev=1430592077&do=diff Lab Publications: text/html 2017-12-01T23:53:17+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/researchbias?rev=1512201197&do=diff The code for generating every figure from the paper can be found [here] The data required for running these scripts can be found [here]. text/html 2018-09-05T13:46:55+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/sepsis?rev=1536180415&do=diff Sepsis Multi-Cohort Analysis Papers ---------- Sepsis vs. Non-Infectious Inflammation Manuscript (Sci Transl Med, 2015) Full-text link to the manuscript (gets behind paywall): Sweeney TE, Shidham A, Wong HR, Khatri P. "A Comprehensive Time-Course-Based Multi-Cohort Analysis of Sepsis and Sterile Inflammation Reveals a Robust Diagnostic Gene Set". Science Translational Medicine, 7, 287ra71 (May 13, 2015). A BBC interview discussing the impact of these results (sepsis discussion begins @ 13… text/html 2019-11-07T00:28:52+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/sle?rev=1573115332&do=diff “” [here] [here] text/html 2016-08-10T15:02:13+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/start?rev=1470866533&do=diff Khatri Lab About Us Housed in the Stanford Institute for Immunity, Transplantation and Infection, and Biomedical Informatics Research in the Department of Medicine, our lab focuses on novel translational bioinformatics approaches to translation medicine in the broad domains of autoimmunity, infection, and inflammation. People Individual Lab Members Publications text/html 2016-05-02T11:03:46+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/tb?rev=1462212226&do=diff Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis Sweeney TE, Braviak L, Tato CM, Khatri P. Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis. Lancet Respir Med. 2016 Feb 19. pii: S2213-2600(16)00048-5. doi: 10.1016/S2213-2600(16)00048-5. [Epub ahead of print] Altmetric article info: Selected News Coverage NPR story about TB signature and the RNA-folding open-science platform EteRNA text/html 2018-09-05T13:48:33+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/testepi?rev=1536180513&do=diff EpiTOF This is a test page for EpiTOF data storage. [this is just a test] text/html 2017-06-20T23:13:28+00:00 Anonymous (anonymous@undisclosed.example.com) https://wiki.khatrilab.stanford.edu/villanisignatures?rev=1498025608&do=diff