Methods to increase reproducibility in two-class comparisons via gene expression meta-analysis
Timothy E. Sweeney, Winston A. Haynes, Francesco Vallania, John P. Ioannidis, Purvesh Khatri
Nucleic Acids Research, 2016
The datasets used in the analysis are all available at their respective repositories; please see Tables S1-S3 for a list of accession numbers.
The core code to run the meta-analysis and various subgroup analyses is deposited here, or can be found on BitBucket at: https://bitbucket.org/khatrilab/meta-analysis-comparison-code/.
The cardiomyopathy data (smallest object) is available here. The other data objects are quite large (~1gb) and are available on request.